Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: mctp1a ENSDARG00000076404

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Description

multiple C2 domains, transmembrane 1a [Source:ZFIN;Acc:ZDB-GENE-110125-3]

Location

Chromosome 5: 50,442,112-50,748,081 reverse strand.

GRCz11:CM002889.2

About this gene

This gene has 5 transcripts (splice variants), 203 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000190090.1	mctp1a-204	2193	730aa	ENSDARP00000147383.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8RKL9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000113985.4	mctp1a-201	6760	680aa	ENSDARP00000097628.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F6D9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000183353.1	mctp1a-203	2151	716aa	ENSDARP00000155267.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8RXE9	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000190318.1	mctp1a-205	2007	668aa	ENSDARP00000152535.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8RTL6	-
ENSDART00000180842.1	mctp1a-202	822	273aa	ENSDARP00000154688.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QPH3	-

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Summary

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