Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: msh4 ENSDARG00000075826

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Description

mutS homolog 4 [Source:ZFIN;Acc:ZDB-GENE-131121-643]

Location

Chromosome 17: 43,889,371-43,920,385 forward strand.

GRCz11:CM002901.2

About this gene

This gene has 5 transcripts (splice variants), 201 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000156871.3	msh4-203	3712	931aa	ENSDARP00000127531.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WBE0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000179918.1	msh4-204	2472	823aa	ENSDARP00000145380.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8PWL2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000111123.4	msh4-201	2370	789aa	ENSDARP00000104178.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F2H3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000154702.2	msh4-202	541	155aa	ENSDARP00000128074.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WCX7	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000180332.1	msh4-205	525	174aa	ENSDARP00000155875.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QRT4	-

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Summary

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