Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: sparcl1 ENSDARG00000074989

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Description

SPARC-like 1 [Source:ZFIN;Acc:ZDB-GENE-060130-6]

Gene Synonyms

SPARCL1, sparcl

Location

Chromosome 1: 37,391,141-37,419,873 forward strand.

GRCz11:CM002885.2

About this gene

This gene has 4 transcripts (splice variants), 189 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000083593.6	sparcl1-201	2310	606aa	ENSDARP00000078028.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3DJ32	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000191986.1	sparcl1-204	4166	606aa	ENSDARP00000147099.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3DJ32	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000168647.2	sparcl1-202	801	246aa	ENSDARP00000135380.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IIF9	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000171672.2	sparcl1-203	752	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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