Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: rx1 ENSDARG00000071684

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Description

retinal homeobox 1 [Source:NCBI gene (formerly Entrezgene);Acc:30472]

Location

Chromosome 22: 4,997,784-5,006,801 reverse strand.

GRCz11:CM002906.2

About this gene

This gene has 3 transcripts (splice variants), 111 orthologues, 56 paralogues and is associated with 13 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000106166.5	rx1-201	2884	330aa	ENSDARP00000096944.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6P984	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000187998.1	rx1-203	4131	330aa	ENSDARP00000146609.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6P984	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000134813.2	rx1-202	938	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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