Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: arfip2a ENSDARG00000059244

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Description

ADP-ribosylation factor interacting protein 2a [Source:ZFIN;Acc:ZDB-GENE-041010-221]

Gene Synonyms

fj35g06, wu:fj35g06, zgc:92579

Location

Chromosome 15: 32,249,062-32,267,153 forward strand.

GRCz11:CM002899.2

About this gene

This gene has 6 transcripts (splice variants), 204 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000082315.5	arfip2a-201	2221	391aa	ENSDARP00000076751.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5XIZ7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000133867.4	arfip2a-202	2189	370aa	ENSDARP00000123682.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QJ24	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000152545.3	arfip2a-206	885	234aa	ENSDARP00000126912.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	R4GEJ9	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000152513.3	arfip2a-205	855	241aa	ENSDARP00000126869.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	R4GEF6	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000152139.2	arfip2a-203	464	133aa	ENSDARP00000126739.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	R4GE26	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000152300.2	arfip2a-204	539	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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