Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: tsc22d1 ENSDARG00000038306

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Description

TSC22 domain family, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7785]

Gene Synonyms

fj34d05, wu:fj34d05, zgc:65869, zgc:85857

Location

Chromosome 9: 18,732,505-18,814,737 reverse strand.

GRCz11:CM002893.2

About this gene

This gene has 4 transcripts (splice variants), 179 orthologues and 5 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000131267.3	tsc22d1-201	2896	838aa	ENSDARP00000116421.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R1Z6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000143165.3	tsc22d1-203	1688	145aa	ENSDARP00000121300.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7SZP1	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000145401.2	tsc22d1-204	1059	133aa	ENSDARP00000122272.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B0V1G3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000131626.3	tsc22d1-202	827	118aa	ENSDARP00000115165.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q9K8	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

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Summary

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