Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: rpl39 ENSDARG00000036316

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Description

ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]

Gene Synonyms

fb09f11, wu:fb09f11, zgc:92371

Location

Chromosome 14: 33,331,773-33,348,221 reverse strand.

GRCz11:CM002898.2

About this gene

This gene has 4 transcripts (splice variants) and 543 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000052761.5	rpl39-201	406	51aa	ENSDARP00000052760.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6IMW8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000187749.1	rpl39-204	156	51aa	ENSDARP00000157246.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6IMW8	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000146999.2	rpl39-203	779	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000146274.2	rpl39-202	488	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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