Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: col9a1b ENSDARG00000031483

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Description

collagen, type IX, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2410]

Gene Synonyms

cb339, col9a1, sb:cb339, wu:fa12a12, wu:fa12d02, wu:fc22c08, wu:fc38d08, zgc:85892

Location

Chromosome 13: 39,119,460-39,160,018 reverse strand.

GRCz11:CM002897.2

About this gene

This gene has 2 transcripts (splice variants), 58 orthologues and 52 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000131508.3	col9a1b-201	2805	681aa	ENSDARP00000121882.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8A4T6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000168795.2	col9a1b-202	2297	669aa	ENSDARP00000133366.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4II70	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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