Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: cmtr1 ENSDARG00000030830

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Description

cap methyltransferase 1 [Source:NCBI gene (formerly Entrezgene);Acc:393102]

Location

Chromosome 23: 35,361,724-35,396,978 reverse strand.

GRCz11:CM002907.2

About this gene

This gene has 5 transcripts (splice variants), 198 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000049373.7	cmtr1-201	3055	829aa	ENSDARP00000049372.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R5C5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000171357.3	cmtr1-204	4365	829aa	ENSDARP00000131572.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R5C5	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000181978.1	cmtr1-205	4296	806aa	ENSDARP00000151962.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000142038.2	cmtr1-202	759	192aa	ENSDARP00000120932.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000145597.2	cmtr1-203	740	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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