Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: cacna1ba ENSDARG00000021735

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Description

calcium channel, voltage-dependent, N type, alpha 1B subunit, a [Source:ZFIN;Acc:ZDB-GENE-060531-44]

Gene Synonyms

CACNA1Bb, cacna1b, si:ch211-238e12.1

Location

Chromosome 5: 29,296,396-29,488,245 reverse strand.

GRCz11:CM002889.2

About this gene

This gene has 3 transcripts (splice variants), 219 orthologues and 32 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000047719.6	cacna1ba-201	6939	2312aa	ENSDARP00000047718.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2BHF4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000141154.3	cacna1ba-202	6813	2270aa	ENSDARP00000114260.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A2BHF3	-
ENSDART00000171165.2	cacna1ba-203	6585	2194aa	ENSDARP00000137390.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	T2B1R0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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