Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: col7a1 ENSDARG00000021720

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Description

collagen, type VII, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2427]

Gene Synonyms

col7a1a, fc07e08, wu:fc07e08

Location

Chromosome 6: 40,184,235-40,312,091 reverse strand.

GRCz11:CM002890.2

About this gene

This gene has 3 transcripts (splice variants), 211 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000154878.3	col7a1-202	10971	3093aa	ENSDARP00000128470.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FA40	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000033844.8	col7a1-201	9282	3093aa	ENSDARP00000029446.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FA40	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000156156.2	col7a1-203	509	160aa	ENSDARP00000129718.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WHK5	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

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Summary

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