Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: scaf4b ENSDARG00000018854

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Description

SR-related CTD-associated factor 4b [Source:NCBI gene (formerly Entrezgene);Acc:552961]

Location

Chromosome 15: 42,285,643-42,347,209 forward strand.

GRCz11:CM002899.2

About this gene

This gene has 4 transcripts (splice variants), 180 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000152731.2	scaf4b-204	3473	905aa	ENSDARP00000126734.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	R4GE22	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000099234.6	scaf4b-201	2350	729aa	ENSDARP00000090006.3	Non stop decay	-	-
ENSDART00000130404.3	scaf4b-203	863	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000129218.3	scaf4b-202	599	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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