Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: hdac1 ENSDARG00000015427

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Description

histone deacetylase 1 [Source:ZFIN;Acc:ZDB-GENE-020419-32]

Gene Synonyms

chunp6919, col, colgate, hdac-1, mp:zf637-2-001987, wu:fb19h11, wu:fi06f03, zgc:101582, zgc:65818

Location

Chromosome 19: 29,808,471-29,821,601 forward strand.

GRCz11:CM002903.2

About this gene

This gene has 5 transcripts (splice variants), 309 orthologues, 11 paralogues and is associated with 158 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000051799.6	hdac1-201	2242	480aa	ENSDARP00000051798.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R653	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000186428.1	hdac1-205	5435	484aa	ENSDARP00000155165.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QIW0	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000164205.2	hdac1-204	1439	472aa	ENSDARP00000133315.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IDY9	-
ENSDART00000148935.2	hdac1-202	1249	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000149128.2	hdac1-203	849	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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