Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: lrrfip2 ENSDARG00000010400

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Description

leucine rich repeat (in FLII) interacting protein 2 [Source:NCBI gene (formerly Entrezgene);Acc:335838]

Location

Chromosome 13: 42,621,205-42,674,001 reverse strand.

GRCz11:CM002897.2

About this gene

This gene has 6 transcripts (splice variants), 211 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000099738.6	lrrfip2-202	2242	405aa	ENSDARP00000090511.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6PGV0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000169083.2	lrrfip2-206	2326	429aa	ENSDARP00000135819.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IMS4	-
ENSDART00000099729.5	lrrfip2-201	1235	161aa	ENSDARP00000090502.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000133848.3	lrrfip2-203	509	131aa	ENSDARP00000122794.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000145745.3	lrrfip2-205	1006	227aa	ENSDARP00000123994.1	Nonsense mediated decay	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000141115.2	lrrfip2-204	529	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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