Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: p4ha2 ENSDARG00000010085

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Description

procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-030827-1]

Gene Synonyms

prolyl 4-hydroxylase A, zgc:91948

Location

Chromosome 21: 43,097,798-43,131,752 reverse strand.

GRCz11:CM002905.2

About this gene

This gene has 4 transcripts (splice variants), 213 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000174463.2	p4ha2-204	1938	536aa	ENSDARP00000143396.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286Y8C8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000024137.8	p4ha2-201	1938	514aa	ENSDARP00000027028.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6DG45	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000160845.2	p4ha2-203	1583	514aa	ENSDARP00000135715.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6DG45	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000122352.4	p4ha2-202	1477	408aa	ENSDARP00000109880.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QCU6	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

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Summary

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