Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: ncl ENSDARG00000002710

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Description

nucleolin [Source:NCBI gene (formerly Entrezgene);Acc:767714]

Location

Chromosome 22: 36,673,312-36,690,751 reverse strand.

GRCz11:CM002906.2

About this gene

This gene has 5 transcripts (splice variants), 116 orthologues, 46 paralogues and is associated with 53 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000124698.4	ncl-202	3219	704aa	ENSDARP00000109546.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8JLQ3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000017188.8	ncl-201	2826	705aa	ENSDARP00000013803.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R6L6	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSDART00000130171.4	ncl-203	2671	387aa	ENSDARP00000111815.2	Nonsense mediated decay	-	-
ENSDART00000147402.2	ncl-205	710	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000141088.2	ncl-204	456	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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