Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: atp2b3a ENSDARG00000043474

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Description

ATPase plasma membrane Ca2+ transporting 3a [Source:ZFIN;Acc:ZDB-GENE-040718-174]

Gene Synonyms

atp2b3, pmca3a, zgc:92885

Location

Chromosome 8: 14,003,232-14,052,349 reverse strand.

GRCz11:CM002892.2

About this gene

This gene has 4 transcripts (splice variants), 97 orthologues and 26 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000093117.6	atp2b3a-201	3635	1176aa	ENSDARP00000087549.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B0S5H1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000135811.3	atp2b3a-203	4671	1248aa	ENSDARP00000119407.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B0S5H3	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000133922.2	atp2b3a-202	901	177aa	ENSDARP00000115111.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B0S5H2	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000140605.2	atp2b3a-204	756	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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