Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: CAPN1 ENSDARG00000055338

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Description

calpain 1 [Source:HGNC Symbol;Acc:HGNC:1476]

Location

Chromosome 21: 27,482,149-27,507,786 reverse strand.

GRCz11:CM002905.2

About this gene

This gene has 6 transcripts (splice variants), 151 orthologues and 29 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000077657.5	CAPN1-202	2115	704aa	ENSDARP00000072123.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QFN0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000191284.1	CAPN1-206	2082	693aa	ENSDARP00000152398.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000178229.2	CAPN1-205	2046	681aa	ENSDARP00000143925.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000186153.1	CAPN1-204	1995	664aa	ENSDARP00000146759.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSDART00000132215.2	CAPN1-203	490	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000132600.2	CAPN1-201	391	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

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Summary

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