Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: lhx1a ENSDARG00000014018

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Description

LIM homeobox 1a [Source:NCBI gene (formerly Entrezgene);Acc:30463]

Location

Chromosome 15: 27,703,409-27,710,575 reverse strand.

GRCz11:CM002899.2

About this gene

This gene has 2 transcripts (splice variants), 85 orthologues and 31 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000005641.6	lhx1a-201	2402	405aa	ENSDARP00000021069.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B3DGH2 Q90476	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000134373.2	lhx1a-202	433	97aa	ENSDARP00000120823.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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