Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: rpusd4 ENSDARG00000012674

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Description

RNA pseudouridine synthase D4 [Source:NCBI gene (formerly Entrezgene);Acc:445101]

Gene Synonyms

si:ch211-14i3.3, zgc:92006

Location

Chromosome 11: 17,964,689-18,081,864 forward strand.

GRCz11:CM002895.2

About this gene

This gene has 4 transcripts (splice variants), 198 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000020283.8	rpusd4-201	1748	358aa	ENSDARP00000011603.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6DBR0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000188329.1	rpusd4-204	1383	358aa	ENSDARP00000144970.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6DBR0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000179986.1	rpusd4-203	1077	358aa	ENSDARP00000152597.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6DBR0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000168082.2	rpusd4-202	706	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

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Summary

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