Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: traf1 ENSDARG00000069482

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Description

TNF receptor-associated factor 1 [Source:ZFIN;Acc:ZDB-GENE-071120-4]

Location

Chromosome 8: 12,408,840-12,432,685 reverse strand.

GRCz11:CM002892.2

About this gene

This gene has 3 transcripts (splice variants), 145 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000101174.6	traf1-201	2220	551aa	ENSDARP00000091948.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B0UXK1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000133350.3	traf1-202	894	298aa	ENSDARP00000114771.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QDI5	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000140699.2	traf1-203	884	293aa	ENSDARP00000120456.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B0UXK3	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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