Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: USP28 ENSBTAG00000002323

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Description

ubiquitin specific peptidase 28 [Source:VGNC Symbol;Acc:VGNC:36720]

Location

Primary_assembly 15: 24,336,893-24,400,181 reverse strand.

ARS-UCD1.3:CM008182.2

About this gene

This gene has 4 transcripts (splice variants), 206 orthologues and 45 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000081720.2	USP28-201	3873	1143aa	ENSBTAP00000070943.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MAA7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000080793.2	USP28-204	3715	1023aa	ENSBTAP00000069124.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1MDU2	-
ENSBTAT00000002998.7	USP28-202	3690	1082aa	ENSBTAP00000002998.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1BDG7	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000085995.2	USP28-203	3456	1004aa	ENSBTAP00000062974.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q1M035	-

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Summary

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